SoyMap Data

G. soja

• WebFPC
• FPC files
• BES files

BACs found via markers

• I01 data (ace format)
• M01 data (ace format)
• GMW3 data (ace format)
• combined data (ace format)

• I01 data (tab delimited)
• M01 data (tab delimited)
• GMW3 data (tab delimited)
• combined data (tab delimited)

soy repeat database

A total of 25,083 Glycine max shot gun sequences comprising approximately 11.4 MB were used for the de novo repeat analysis using RECON (Bao and Eddy, 2002)*. The raw RECON output was parsed for elements with length greater than or equal to 40 bases and present more than twice. 46.4% of the sequences were detected as repetitive by RECON out of which 13.4 % were tandem repeats.

*Bao Z and Eddy S R, 2002. Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes. Genome Research 12: 1269-1276.

• Glycine max (Williams 82)
• Glycine syndetika
• Glycine tomentella (T2, 80 chromosome)
• Glycine tomentella (D3b, 40 chromosome)

soy sequences in genbank

• all soy Nucleotide sequences
• soy CoreNucleotide sequences
• soy GSS sequences
• soy EST sequences

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